UCR

Center for Infectious Disease and Vector Research



Events Calendar


Training:
Web-based Analysis of Next Generation Sequence Data-Bioinformatics Workshop

Neerja Katiyar & Thomas Girke

Monday, December 16, 2013
1:305:30 p.m.

Location:

Genomics Building , Auditorium
Parking Information

Description:

Description: This workshop will introduce basic NGS data analysis routines using the web-based Galaxy environment. It will include the following topics: (1) assessment of read qualities; (2) read trimming and filtering routines; (3) aligning reads to reference genomes; (4) generation of read counts for RNA-Seq data; (5) peak calling for ChIP-Seq experiments and (6) visualization routines of read pileups along with annotation information using the freely and very easy-to-use IGV genome browser from the Broad Institute. The material will be useful for both complete beginners and intermediate users (e.g. attended previous R workshop on NGS data analysis). No special computer knowledge is required for this workshop. Maximum number of participants: 40  [ Schedule and Teaching Material ] 

How to sign up:
 send chosen workshop date, your name, email address, title of your position, lab affiliation (PI) and department information to thomas.girke@ucr.edu.

Registration fee*:
 no charge for participants from registered labs, $23 for UCR members, $75 for participants from external academic institutions, and $102 for participants from commercial organizations and academic institutions outside of the US.

Laptop requirements:
 Participants will work during the course from their own laptops (Win, Mac or Linux) with a recent web browser preinstalled. A functional wireless connection will be essential.

Additional Information:

Open to:

General Public

Admission:

Reservations Required

Sponsor:

Institute for Integrative Genome Biology


More Information

General Campus Information

University of California, Riverside
900 University Ave.
Riverside, CA 92521
Tel: (951) 827-1012

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Department Information

Institute of Integrative Genomics Biology
2150 Batchelor Hall

Tel: (951) 827-7177

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